Pseudomonas protegens Pf-5, PFL_3939 (liuD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3939
Name
liuD
Replicon chromosome
Genomic location 4552193 - 4554139 (+ strand)

Cross-References

RefSeq YP_261039.1
GI 70731298
EC Number 6.4.1.4
Entrez 3477697
INSDC AAY93203.1
NCBI Locus Tag PFL_3939
UniParc UPI000054DA61
UniProtKB Acc Q4K9P4
UniProtKB ID Q4K9P4_PSEF5
UniRef100 UniRef100_Q4K9P4
UniRef50 UniRef50_Q9I299
UniRef90 UniRef90_Q4K9P4

Product

Feature Type CDS
Coding Frame 1
Product Name
methylcrotonyl-CoA carboxylase, alpha-subunit LiuD
Synonyms
Evidence for Translation
Charge (pH 7) -14.26
Kyte-Doolittle Hydrophobicity Value -0.171
Molecular Weight (kDa) 69876.4
Isoelectric Point (pI) 5.41

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 643 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003427 (523 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3939
Search term: liuD

Human Homologs

Ensembl 110, assembly GRCh38.p14
methylcrotonyl-CoA carboxylase subunit 1 [Source:HGNC Symbol;Acc:HGNC:6936]
E-value: 1.4e-158
Percent Identity: 45.3

References

No references are associated with this feature.