Pseudomonas protegens Pf-5, PFL_4200

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4200
Name
Replicon chromosome
Genomic location 4887412 - 4887951 (+ strand)

Cross-References

RefSeq YP_261292.1
GI 70731551
Entrez 3476938
INSDC AAY93456.1
NCBI Locus Tag PFL_4200
UniParc UPI000054DB5A
UniProtKB Acc Q4K8Z1
UniProtKB ID Q4K8Z1_PSEF5
UniRef100 UniRef100_Q4K8Z1
UniRef50 UniRef50_Q48KP9
UniRef90 UniRef90_Q4K8Z1

Product

Feature Type CDS
Coding Frame 1
Product Name
exonuclease
Synonyms
Evidence for Translation
Charge (pH 7) 0.89
Kyte-Doolittle Hydrophobicity Value -0.525
Molecular Weight (kDa) 20.9
Isoelectric Point (pI) 7.30

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 61 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003789 (514 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4200
Search term: exonuclease

Human Homologs

References

No references are associated with this feature.