Pseudomonas protegens Pf-5, PFL_4294 (kdpD_1)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_4294
Name	kdpD_1
Replicon	chromosome
Genomic location	4988523 - 4991174 (- strand)

Cross-References

RefSeq	YP_261386.1
GI	70731645
Entrez	3478418
INSDC	AAY93550.1
NCBI Locus Tag	PFL_4294
UniParc	UPI000054DBB8
UniProtKB Acc	Q4K8P7
UniProtKB ID	Q4K8P7_PSEF5
UniRef100	UniRef100_Q4K8P7
UniRef50	UniRef50_Q48K33
UniRef90	UniRef90_Q4K8P7

Product

Feature Type	CDS
Coding Frame	1
Product Name	sensor histidine kinase KdpD
Synonyms
Evidence for Translation
Charge (pH 7)	-7.03
Kyte-Doolittle Hydrophobicity Value	-0.080
Molecular Weight (kDa)	96307.1
Isoelectric Point (pI)	6.41

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
2R8R	TRANSFERASE	09/11/07	Crystal structure of the N-terminal region (19..243) of sensor protein KdpD from Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas syringae pv. tomato	2.3	X-RAY DIFFRACTION	90.3

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 618 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003738 (513 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_4294 Search term: kdpD_1 Search term: sensor histidine kinase KdpD

Human Homologs

References