Pseudomonas protegens Pf-5, PFL_4305 (wbpM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4305
Name
wbpM
Replicon chromosome
Genomic location 5001557 - 5003551 (- strand)

Cross-References

RefSeq YP_261397.1
GI 70731656
Entrez 3478429
INSDC AAY93561.1
NCBI Locus Tag PFL_4305
UniParc UPI000054DBC3
UniProtKB Acc Q4K8N6
UniProtKB ID Q4K8N6_PSEF5
UniRef100 UniRef100_Q4K8N6
UniRef50 UniRef50_G8Q1T5
UniRef90 UniRef90_Q4K8N6

Product

Feature Type CDS
Coding Frame 1
Product Name
nucleotide sugar epimerase/dehydratase WbpM
Synonyms
Evidence for Translation
Charge (pH 7) 6.78
Kyte-Doolittle Hydrophobicity Value 0.177
Molecular Weight (kDa) 73837.5
Isoelectric Point (pI) 8.66

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 455 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002459 (529 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4305
Search term: wbpM

Human Homologs

References

No references are associated with this feature.