Pseudomonas protegens Pf-5, PFL_4320

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4320
Name
Replicon chromosome
Genomic location 5023328 - 5024254 (+ strand)

Cross-References

RefSeq YP_261412.1
GI 70731670
Entrez 3478443
INSDC AAY93575.1
NCBI Locus Tag PFL_4320
UniParc UPI000054DBD2
UniProtKB Acc Q4K8M1
UniProtKB ID Q4K8M1_PSEF5
UniRef100 UniRef100_Q4K8M1
UniRef50 UniRef50_A0A0B7DFS8
UniRef90 UniRef90_Q4K8M1

Product

Feature Type CDS
Coding Frame 1
Product Name
diguanylate cyclase domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) 5.14
Kyte-Doolittle Hydrophobicity Value -0.356
Molecular Weight (kDa) 34.5
Isoelectric Point (pI) 9.39

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 456 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000167 (2758 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4320

Human Homologs

References

No references are associated with this feature.