Pseudomonas protegens Pf-5, PFL_4498 (algZ)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_4498
Name	algZ
Replicon	chromosome
Genomic location	5211118 - 5211444 (+ strand)

Cross-References

RefSeq	YP_261585.1
GI	70731843
Entrez	3478616
INSDC	AAY93748.1
NCBI Locus Tag	PFL_4498
UniParc	UPI000054DC7E
UniProtKB Acc	Q4K848
UniProtKB ID	Q4K848_PSEF5
UniRef100	UniRef100_G9HQL2
UniRef50	UniRef50_F8H3I4
UniRef90	UniRef90_C3K0S0

Product

Feature Type	CDS
Coding Frame	1
Product Name	alginate biosynthesis transcriptional activator AlgZ
Synonyms
Evidence for Translation
Charge (pH 7)	0.19
Kyte-Doolittle Hydrophobicity Value	-0.521
Molecular Weight (kDa)	12.4
Isoelectric Point (pI)	7.09

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 17 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002243 (527 members)
Putative Inparalogs	1 predicted inparalogs Arc-like DNA binding domain-containing protein (PFL_6256) 81.8% identity

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_4498 Search term: algZ Search term: alginate biosynthesis transcriptional activator AlgZ

Human Homologs

References