Pseudomonas protegens Pf-5, PFL_4564

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4564
Name
Replicon chromosome
Genomic location 5275355 - 5275699 (- strand)

Cross-References

RefSeq YP_261648.1
GI 70731906
Entrez 3478679
INSDC AAY93811.1
NCBI Locus Tag PFL_4564
UniParc UPI000054DCBC
UniProtKB Acc Q4K7Y5
UniProtKB ID Q4K7Y5_PSEF5
UniRef100 UniRef100_Q4K7Y5
UniRef50 UniRef50_Q4K7Y5
UniRef90 UniRef90_Q4K7Y5

Product

Feature Type CDS
Coding Frame 1
Product Name
DGPF domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) -4.59
Kyte-Doolittle Hydrophobicity Value -0.125
Molecular Weight (kDa) 12.3
Isoelectric Point (pI) 4.65

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 150 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001284 (459 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4564

Human Homologs

References

No references are associated with this feature.