Pseudomonas protegens Pf-5, PFL_4613 (oprB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4613
Name
oprB
Replicon chromosome
Genomic location 5321702 - 5323051 (- strand)

Cross-References

RefSeq YP_261697.1
GI 70731955
Entrez 3478728
INSDC AAY93860.1
NCBI Locus Tag PFL_4613
UniParc UPI000054DCED
UniProtKB Acc Q4K7T6
UniProtKB ID Q4K7T6_PSEF5
UniRef100 UniRef100_Q4K7T6
UniRef50 UniRef50_Q51485
UniRef90 UniRef90_Q4K7T6

Product

Feature Type CDS
Coding Frame 1
Product Name
carbohydrate-selective porin OprB
Synonyms
Evidence for Translation
Charge (pH 7) -7.21
Kyte-Doolittle Hydrophobicity Value -0.548
Molecular Weight (kDa) 49.9
Isoelectric Point (pI) 5.93

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 49 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002430 (700 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4613
Search term: oprB

Human Homologs

References

No references are associated with this feature.