Pseudomonas protegens Pf-5, PFL_4812

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4812
Name
Replicon chromosome
Genomic location 5554219 - 5555856 (- strand)

Cross-References

RefSeq YP_261893.1
GI 70732137
Entrez 3479223
INSDC AAY94042.1
NCBI Locus Tag PFL_4812
UniParc UPI000054DDB0
UniProtKB Acc Q4K790
UniProtKB ID Q4K790_PSEF5
UniRef100 UniRef100_Q4K790
UniRef50 UniRef50_Q4K790
UniRef90 UniRef90_Q4K790

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -8.76
Kyte-Doolittle Hydrophobicity Value 0.180
Molecular Weight (kDa) 57598.5
Isoelectric Point (pI) 5.45

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 594 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001338 (460 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4812

Human Homologs

Ensembl 110, assembly GRCh38.p14
2-hydroxyacyl-CoA lyase 1 [Source:HGNC Symbol;Acc:HGNC:17856]
E-value: 3.4e-30
Percent Identity: 25.4

References

No references are associated with this feature.