Pseudomonas protegens Pf-5, PFL_4944 (xseA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4944
Name
xseA
Replicon chromosome
Genomic location 5697209 - 5698588 (+ strand)

Cross-References

RefSeq YP_262024.1
GI 70732268
EC Number 3.1.11.6
Entrez 3479355
INSDC AAY94173.1
NCBI Locus Tag PFL_4944
UniParc UPI000054DE33
UniProtKB Acc Q4K6V9
UniProtKB ID EX7L_PSEF5
UniRef100 UniRef100_Q4K6V9
UniRef50 UniRef50_Q886X9
UniRef90 UniRef90_Q4K6V9

Product

Feature Type CDS
Coding Frame 1
Product Name
exodeoxyribonuclease VII large subunit
Synonyms
Evidence for Translation
Charge (pH 7) 20.10
Kyte-Doolittle Hydrophobicity Value -0.251
Molecular Weight (kDa) 51.1
Isoelectric Point (pI) 11.34

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 530 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001887 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4944
Search term: xseA

Human Homologs

References

No references are associated with this feature.