Pseudomonas protegens Pf-5, PFL_5087 (trpS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5087
Name
trpS
Replicon chromosome
Genomic location 5848639 - 5849994 (- strand)

Cross-References

RefSeq YP_262166.1
GI 70732410
EC Number 6.1.1.2
Entrez 3479497
INSDC AAY94315.1
NCBI Locus Tag PFL_5087
UniParc UPI000054DEC1
UniProtKB Acc Q4K6G7
UniProtKB ID Q4K6G7_PSEF5
UniRef100 UniRef100_Q4K6G7
UniRef50 UniRef50_Q9HVX6
UniRef90 UniRef90_Q4K6G7

Product

Feature Type CDS
Coding Frame 1
Product Name
tryptophanyl-tRNA synthetase
Synonyms
Evidence for Translation
Charge (pH 7) -5.91
Kyte-Doolittle Hydrophobicity Value -0.228
Molecular Weight (kDa) 49338.2
Isoelectric Point (pI) 5.88

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 600 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004028 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5087
Search term: trpS

Human Homologs

Ensembl 110, assembly GRCh38.p14
tryptophanyl tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:12730]
E-value: 5.5e-34
Percent Identity: 29.7

References

No references are associated with this feature.