Pseudomonas protegens Pf-5, PFL_5119

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5119
Name
Replicon chromosome
Genomic location 5884743 - 5885516 (+ strand)

Cross-References

RefSeq YP_262198.2
GI 346643213
Entrez 3479523
INSDC AAY94341.2
NCBI Locus Tag PFL_5119
UniParc UPI00021A0079
UniProtKB Acc Q4K6D5
UniProtKB ID Q4K6D5_PSEF5
UniRef100 UniRef100_Q4K6D5
UniRef50 UniRef50_Q4K6D5
UniRef90 UniRef90_Q4K6D5

Product

Feature Type CDS
Coding Frame 1
Product Name
AraC family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 1.73
Kyte-Doolittle Hydrophobicity Value -0.075
Molecular Weight (kDa) 28987.2
Isoelectric Point (pI) 7.38

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 192 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000764 (1419 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5119

Human Homologs

References

No references are associated with this feature.