Pseudomonas protegens Pf-5, PFL_5171 (pobR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5171
Name
pobR
Replicon chromosome
Genomic location 5931684 - 5932574 (+ strand)

Cross-References

RefSeq YP_262249.1
GI 70732486
Entrez 3479573
INSDC AAY94391.1
NCBI Locus Tag PFL_5171
UniParc UPI000054DF14
UniProtKB Acc Q4K684
UniProtKB ID Q4K684_PSEF5
UniRef100 UniRef100_Q4K684
UniRef50 UniRef50_Q4K684
UniRef90 UniRef90_Q4K684

Product

Feature Type CDS
Coding Frame 1
Product Name
transcriptional regulator PobR
Synonyms
Evidence for Translation
Charge (pH 7) 9.30
Kyte-Doolittle Hydrophobicity Value -0.331
Molecular Weight (kDa) 33.5
Isoelectric Point (pI) 9.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 329 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000246 (890 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5171
Search term: pobR

Human Homologs

References

No references are associated with this feature.