Pseudomonas protegens Pf-5, PFL_5376 (hasD)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_5376
Name	hasD
Replicon	chromosome
Genomic location	6144870 - 6146666 (- strand)

Cross-References

RefSeq	YP_262444.1
GI	70732681
Entrez	3479768
INSDC	AAY94586.1
NCBI Locus Tag	PFL_5376
UniParc	UPI000054DFD4
UniProtKB Acc	Q4K5N9
UniProtKB ID	Q4K5N9_PSEF5
UniRef100	UniRef100_Q4K5N9
UniRef50	UniRef50_Q03024
UniRef90	UniRef90_Q4K5N9

Product

Feature Type	CDS
Coding Frame	1
Product Name	type 1 secretion system ATPase HasD
Synonyms
Evidence for Translation
Charge (pH 7)	11.59
Kyte-Doolittle Hydrophobicity Value	0.222
Molecular Weight (kDa)	64049.0
Isoelectric Point (pI)	9.92

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001198 (779 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_5376 Search term: hasD Search term: type 1 secretion system ATPase HasD

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000497931 ATP binding cassette subfamily B member 11 [Source:HGNC Symbol;Acc:HGNC:42] E-value: 1.6e-28 Percent Identity: 29.8

References