Pseudomonas protegens Pf-5, PFL_5417 (hrpB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5417
Name
hrpB
Replicon chromosome
Genomic location 6184851 - 6187370 (- strand)

Cross-References

RefSeq YP_262485.1
GI 70732722
EC Number 3.6.1.-
Entrez 3479809
INSDC AAY94627.1
NCBI Locus Tag PFL_5417
UniParc UPI000054DFFD
UniProtKB Acc Q4K5J8
UniProtKB ID Q4K5J8_PSEF5
UniRef100 UniRef100_Q4K5J8
UniRef50 UniRef50_B6IT84
UniRef90 UniRef90_Q4K5J8

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent helicase HrpB
Synonyms
Evidence for Translation
Charge (pH 7) 3.82
Kyte-Doolittle Hydrophobicity Value -0.235
Molecular Weight (kDa) 92550.0
Isoelectric Point (pI) 7.82

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 314 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001718 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5417
Search term: hrpB

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 7.4e-48
Percent Identity: 30.6
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 7.4e-48
Percent Identity: 30.6
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 7.4e-48
Percent Identity: 30.6
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 7.4e-48
Percent Identity: 30.6
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 7.4e-48
Percent Identity: 30.6
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 7.4e-48
Percent Identity: 30.6

References

No references are associated with this feature.