Pseudomonas protegens Pf-5, PFL_5443

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5443
Name
Replicon chromosome
Genomic location 6213610 - 6214932 (+ strand)

Cross-References

RefSeq YP_262511.2
GI 346643252
Entrez 3479835
INSDC AAY94653.2
NCBI Locus Tag PFL_5443
UniParc UPI00021A00E8
UniProtKB Acc Q4K5H2
UniProtKB ID Q4K5H2_PSEF5
UniRef100 UniRef100_Q4K5H2
UniRef50 UniRef50_A0A0B7DIK3
UniRef90 UniRef90_Q4K5H2

Product

Feature Type CDS
Coding Frame 1
Product Name
lytic murein transglycosylase
Synonyms
Evidence for Translation
Charge (pH 7) 0.38
Kyte-Doolittle Hydrophobicity Value -0.238
Molecular Weight (kDa) 48084.8
Isoelectric Point (pI) 7.15

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 231 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001689 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5443

Human Homologs

References

No references are associated with this feature.