Pseudomonas protegens Pf-5, PFL_5519 (ribE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5519
Name
ribE
Replicon chromosome
Genomic location 6302159 - 6302635 (- strand)

Cross-References

RefSeq YP_262587.1
GI 70732820
EC Number 6.3.3.-
Entrez 3479907
INSDC AAY94725.1
NCBI Locus Tag PFL_5519
UniParc UPI000054E062
UniProtKB Acc Q4K596
UniProtKB ID Q4K596_PSEF5
UniRef100 UniRef100_Q4K596
UniRef50 UniRef50_P45149
UniRef90 UniRef90_Q889Q6

Product

Feature Type CDS
Coding Frame 1
Product Name
6,7-dimethyl-8-ribityllumazine synthase
Synonyms
Evidence for Translation
Charge (pH 7) -1.56
Kyte-Doolittle Hydrophobicity Value 0.444
Molecular Weight (kDa) 16.4
Isoelectric Point (pI) 5.77

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 612 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001631 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5519
Search term: ribE

Human Homologs

References

No references are associated with this feature.