Pseudomonas protegens Pf-5, PFL_5520 (ribB)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_5520
Name	ribB
Replicon	chromosome
Genomic location	6302727 - 6303818 (- strand)

Cross-References

RefSeq	YP_262588.1
GI	70732821
EC Number	4.1.99.12
Entrez	3479908
INSDC	AAY94726.1
NCBI Locus Tag	PFL_5520
UniParc	UPI000054E063
UniProtKB Acc	Q4K595
UniProtKB ID	Q4K595_PSEF5
UniRef100	UniRef100_Q4K595
UniRef50	UniRef50_Q9HWX4
UniRef90	UniRef90_Q889Q7

Product

Feature Type	CDS
Coding Frame	1
Product Name	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein
Synonyms
Evidence for Translation
Charge (pH 7)	-13.30
Kyte-Doolittle Hydrophobicity Value	-0.083
Molecular Weight (kDa)	39.6
Isoelectric Point (pI)	5.07

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 612 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001630 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_5520 Search term: ribB Search term: bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein

Human Homologs

References