Pseudomonas protegens Pf-5, PFL_5535 (lhr)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5535
Name
lhr
Replicon chromosome
Genomic location 6314992 - 6319278 (+ strand)

Cross-References

RefSeq YP_262603.2
GI 346643262
EC Number 3.6.1.-
Entrez 3479923
INSDC AAY94741.2
NCBI Locus Tag PFL_5535
UniParc UPI00021A0105
UniProtKB Acc Q4K580
UniProtKB ID Q4K580_PSEF5
UniRef100 UniRef100_Q4K580
UniRef50 UniRef50_Q4K580
UniRef90 UniRef90_Q4K580

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent helicase
Synonyms
Evidence for Translation
Charge (pH 7) -5.75
Kyte-Doolittle Hydrophobicity Value -0.057
Molecular Weight (kDa) 156056.7
Isoelectric Point (pI) 6.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 585 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002341 (476 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5535
Search term: lhr

Human Homologs

References

No references are associated with this feature.