Pseudomonas protegens Pf-5, PFL_5539

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5539
Name
Replicon chromosome
Genomic location 6324263 - 6324829 (+ strand)

Cross-References

RefSeq YP_262607.2
GI 346643264
EC Number 3.-.-.-
Entrez 3479927
INSDC AAY94745.2
NCBI Locus Tag PFL_5539
UniParc UPI00021A0107
UniProtKB Acc Q4K576
UniProtKB ID Q4K576_PSEF5
UniRef100 UniRef100_Q4K576
UniRef50 UniRef50_Q4K576
UniRef90 UniRef90_Q4K576

Product

Feature Type CDS
Coding Frame 1
Product Name
isochorismatase
Synonyms
Evidence for Translation
Charge (pH 7) -7.39
Kyte-Doolittle Hydrophobicity Value 0.114
Molecular Weight (kDa) 20.2
Isoelectric Point (pI) 4.94

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 355 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG017691 (150 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5539
Search term: isochorismatase

Human Homologs

References

No references are associated with this feature.