Strain |
Pseudomonas protegens Pf-5
GCF_000012265.1|latest |
Locus Tag |
PFL_5588
|
Name |
rpoC
|
Replicon | chromosome |
Genomic location | 6367268 - 6371467 (- strand) |
RefSeq | YP_262656.1 |
GI | 70732888 |
EC Number | 2.7.7.6 |
Entrez | 3479975 |
INSDC | AAY94793.1 |
NCBI Locus Tag | PFL_5588 |
UniParc | UPI000054E09F |
UniProtKB Acc | Q4K527 |
UniProtKB ID | RPOC_PSEF5 |
UniRef100 | UniRef100_Q4K527 |
UniRef50 | UniRef50_A7ZUK2 |
UniRef90 | UniRef90_Q4K527 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
DNA-directed RNA polymerase subunit beta'
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 2.02 |
Kyte-Doolittle Hydrophobicity Value | -0.194 |
Molecular Weight (kDa) | 154.5 |
Isoelectric Point (pI) | 7.18 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7VF9 | TRANSCRIPTION | 09/10/21 | Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes | Pseudomonas aeruginosa PAO1 | 4.04 | ELECTRON MICROSCOPY | 92.4 |
7XYA | TRANSCRIPTION | 06/01/22 | The cryo-EM structure of an AlpA-loading complex | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 3.3 | ELECTRON MICROSCOPY | 92.5 |
7XL4 | TRANSCRIPTION | 04/21/22 | Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes with transcription factor SutA (closed lobe) | Pseudomonas aeruginosa PAO1 | 3.86 | ELECTRON MICROSCOPY | 92.4 |
7XYB | TRANSCRIPTION | 06/01/22 | The cryo-EM structure of an AlpA-loaded complex | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 3.7 | ELECTRON MICROSCOPY | 92.5 |
7F0R | TRANSCRIPTION/DNA | 06/06/21 | Cryo-EM structure of Pseudomonas aeruginosa SutA transcription activation complex | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT | 5.8 | ELECTRON MICROSCOPY | 92.4 |
7XL3 | TRANSCRIPTION | 04/21/22 | Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes with transcription factor SutA (open lobe) | Pseudomonas aeruginosa PAO1 | 3.13 | ELECTRON MICROSCOPY | 92.4 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 667 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001442 (533 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PFL_5588
Search term: rpoC
Search term: DNA-directed RNA polymerase subunit beta'
|
Ensembl
110, assembly
GRCh38.p14
|
RNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]
E-value:
6.7e-54
Percent Identity:
22.2
|
Ensembl
110, assembly
GRCh38.p14
|
RNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]
E-value:
6.7e-54
Percent Identity:
22.2
|