Pseudomonas protegens Pf-5, PFL_5644

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_5644
Name
Replicon	chromosome
Genomic location	6428466 - 6429140 (- strand)

Cross-References

RefSeq	YP_262703.1
GI	70732932
Entrez	3480019
INSDC	AAY94837.1
NCBI Locus Tag	PFL_5644
UniParc	UPI000054E0CD
UniProtKB Acc	Q4K4Y0
UniProtKB ID	Q4K4Y0_PSEF5
UniRef100	UniRef100_Q4K4Y0
UniRef50	UniRef50_Q4K4Y0
UniRef90	UniRef90_Q4K4Y0

Product

Feature Type	CDS
Coding Frame	1
Product Name	nucleotidyl transferase
Synonyms
Evidence for Translation
Charge (pH 7)	-1.67
Kyte-Doolittle Hydrophobicity Value	0.059
Molecular Weight (kDa)	24192.8
Isoelectric Point (pI)	6.68

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 622 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000580 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_5644 Search term: nucleotidyl transferase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000309092 GDP-mannose pyrophosphorylase B [Source:HGNC Symbol;Acc:HGNC:22932] E-value: 1.9e-22 Percent Identity: 32.4
Ensembl 110, assembly GRCh38.p14	ENSP00000418565 GDP-mannose pyrophosphorylase B [Source:HGNC Symbol;Acc:HGNC:22932] E-value: 1.9e-22 Percent Identity: 32.4
Ensembl 110, assembly GRCh38.p14	ENSP00000311130 GDP-mannose pyrophosphorylase B [Source:HGNC Symbol;Acc:HGNC:22932] E-value: 1.9e-22 Percent Identity: 32.4

References