Pseudomonas protegens Pf-5, PFL_5663 (rpoD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5663
Name
rpoD
Replicon chromosome
Genomic location 6449991 - 6451838 (+ strand)

Cross-References

RefSeq YP_262722.1
GI 70732951
Entrez 3480038
INSDC AAY94856.1
NCBI Locus Tag PFL_5663
UniParc UPI0000134835
UniProtKB Acc Q4K4W1
UniProtKB ID Q4K4W1_PSEF5
UniRef100 UniRef100_P52326
UniRef50 UniRef50_P00579
UniRef90 UniRef90_P52326

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor RpoD
Synonyms
Evidence for Translation
Charge (pH 7) -25.81
Kyte-Doolittle Hydrophobicity Value -0.539
Molecular Weight (kDa) 69.4
Isoelectric Point (pI) 4.74

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000559 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5663
Search term: rpoD

Human Homologs

References

No references are associated with this feature.