Pseudomonas protegens Pf-5, PFL_5726 (soxA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5726
Name
soxA
Replicon chromosome
Genomic location 6522981 - 6525998 (- strand)

Cross-References

RefSeq YP_262784.1
GI 70733011
EC Number 1.5.3.1
Entrez 3480098
INSDC AAY94916.1
NCBI Locus Tag PFL_5726
UniParc UPI000054E119
UniProtKB Acc Q4K4P9
UniProtKB ID Q4K4P9_PSEF5
UniRef100 UniRef100_Q4K4P9
UniRef50 UniRef50_D7I638
UniRef90 UniRef90_D7I638

Product

Feature Type CDS
Coding Frame 1
Product Name
sarcosine oxidase subunit alpha
Synonyms
Evidence for Translation
Charge (pH 7) 2.76
Kyte-Doolittle Hydrophobicity Value -0.205
Molecular Weight (kDa) 109560.8
Isoelectric Point (pI) 7.27

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 496 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004972 (512 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5726
Search term: soxA

Human Homologs

Ensembl 110, assembly GRCh38.p14
dimethylglycine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:24475]
E-value: 2.9e-30
Percent Identity: 26.4

References

No references are associated with this feature.