Pseudomonas protegens Pf-5, PFL_5764 (choV)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_5764
Name	choV
Replicon	chromosome
Genomic location	6564317 - 6565495 (+ strand)

Cross-References

RefSeq	YP_262822.1
GI	70733049
Entrez	3480136
INSDC	AAY94954.1
NCBI Locus Tag	PFL_5764
UniParc	UPI000054E13F
UniProtKB Acc	Q4K4L1
UniProtKB ID	Q4K4L1_PSEF5
UniRef100	UniRef100_Q4K4L1
UniRef50	UniRef50_G8Q8H8
UniRef90	UniRef90_G8Q2G6

Product

Feature Type	CDS
Coding Frame	1
Product Name	choline ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	3.04
Kyte-Doolittle Hydrophobicity Value	-0.258
Molecular Weight (kDa)	43.7
Isoelectric Point (pI)	8.12

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004691 (971 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_5764 Search term: choV Search term: choline ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000301732 ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33] E-value: 3.4e-19 Percent Identity: 31.9
Ensembl 110, assembly GRCh38.p14	ENSP00000371818 ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33] E-value: 3.4e-19 Percent Identity: 31.9

References