Pseudomonas protegens Pf-5, PFL_5845 (rdgB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5845
Name
rdgB
Replicon chromosome
Genomic location 6651903 - 6652496 (+ strand)

Cross-References

RefSeq YP_262903.1
GI 70733130
EC Number 3.6.1.15
Entrez 3480217
INSDC AAY95035.1
NCBI Locus Tag PFL_5845
UniParc UPI000054E190
UniProtKB Acc Q4K4D0
UniProtKB ID Q4K4D0_PSEF5
UniRef100 UniRef100_Q4K4D0
UniRef50 UniRef50_Q8ZHF4
UniRef90 UniRef90_Q4K4D0

Product

Feature Type CDS
Coding Frame 1
Product Name
dITP/XTP pyrophosphatase
Synonyms
Evidence for Translation
Charge (pH 7) -2.89
Kyte-Doolittle Hydrophobicity Value -0.070
Molecular Weight (kDa) 21039.7
Isoelectric Point (pI) 6.01

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 644 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000378 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5845
Search term: rdgB

Human Homologs

References

No references are associated with this feature.