Pseudomonas protegens Pf-5, PFL_5908

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5908
Name
Replicon chromosome
Genomic location 6718086 - 6719015 (- strand)

Cross-References

RefSeq YP_262966.1
GI 70733193
Entrez 3480280
INSDC AAY95098.1
NCBI Locus Tag PFL_5908
UniParc UPI000054E1CF
UniProtKB Acc Q4K467
UniProtKB ID Q4K467_PSEF5
UniRef100 UniRef100_Q4K467
UniRef50 UniRef50_G8Q0B7
UniRef90 UniRef90_Q4K467

Product

Feature Type CDS
Coding Frame 1
Product Name
SdiA-regulated domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) -5.58
Kyte-Doolittle Hydrophobicity Value -0.195
Molecular Weight (kDa) 34600.3
Isoelectric Point (pI) 5.44

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 25 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000316 (526 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5908

Human Homologs

References

No references are associated with this feature.