Pseudomonas protegens Pf-5, PFL_5940 (oprE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5940
Name
oprE
Replicon chromosome
Genomic location 6751218 - 6752543 (- strand)

Cross-References

RefSeq YP_262998.1
GI 70733225
Entrez 3480312
INSDC AAY95130.1
NCBI Locus Tag PFL_5940
UniParc UPI000054E1EF
UniProtKB Acc Q4K435
UniProtKB ID Q4K435_PSEF5
UniRef100 UniRef100_Q4K435
UniRef50 UniRef50_W6R8G1
UniRef90 UniRef90_Q4K435

Product

Feature Type CDS
Coding Frame 1
Product Name
porin
Synonyms
Evidence for Translation
Charge (pH 7) -0.29
Kyte-Doolittle Hydrophobicity Value -0.462
Molecular Weight (kDa) 47.9
Isoelectric Point (pI) 6.82

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 22 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000288 (506 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5940
Search term: oprE
Search term: porin

Human Homologs

References

No references are associated with this feature.