Pseudomonas protegens Pf-5, PFL_6064

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6064
Name
Replicon chromosome
Genomic location 6885451 - 6885831 (+ strand)

Cross-References

RefSeq YP_263122.1
GI 70733347
Entrez 3480434
INSDC AAY95252.1
NCBI Locus Tag PFL_6064
UniParc UPI000054E267
UniProtKB Acc Q4K3R1
UniProtKB ID Q4K3R1_PSEF5
UniRef100 UniRef100_A0A0C5EHH8
UniRef50 UniRef50_A0A0B7DKC4
UniRef90 UniRef90_A0A0B7DKC4

Product

Feature Type CDS
Coding Frame 1
Product Name
endoribonuclease L-PSP
Synonyms
Evidence for Translation
Charge (pH 7) -1.77
Kyte-Doolittle Hydrophobicity Value 0.151
Molecular Weight (kDa) 13.5
Isoelectric Point (pI) 5.11

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3K0T SUGAR BINDING PROTEIN 09/25/09 Crystal structure of PSPTO -PSP protein in complex with D-beta-Glucose from Pseudomonas syringae pv. tomato str. DC3000 Pseudomonas syringae pv. tomato 2.1 X-RAY DIFFRACTION 91.9

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 542 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004908 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6064

Human Homologs

Ensembl 110, assembly GRCh38.p14
reactive intermediate imine deaminase A homolog [Source:HGNC Symbol;Acc:HGNC:16897]
E-value: 4.2e-24
Percent Identity: 44.0

References

No references are associated with this feature.