Pseudomonas protegens Pf-5, PFL_6072

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6072
Name
Replicon chromosome
Genomic location 6893219 - 6894619 (+ strand)

Cross-References

RefSeq YP_263130.1
GI 70733355
Entrez 3480442
INSDC AAY95260.1
NCBI Locus Tag PFL_6072
UniParc UPI000054E26F
UniProtKB Acc Q4K3Q3
UniProtKB ID Q4K3Q3_PSEF5
UniRef100 UniRef100_Q4K3Q3
UniRef50 UniRef50_A0A083UEA4
UniRef90 UniRef90_A0A083UEA4

Product

Feature Type CDS
Coding Frame 1
Product Name
HDOD domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) -11.28
Kyte-Doolittle Hydrophobicity Value 0.024
Molecular Weight (kDa) 51.2
Isoelectric Point (pI) 5.32

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 134 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004914 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6072

Human Homologs

References

No references are associated with this feature.