Pseudomonas protegens Pf-5, PFL_6124

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6124
Name
Replicon chromosome
Genomic location 6954714 - 6954959 (- strand)

Cross-References

RefSeq YP_263182.2
GI 346643335
Entrez 3480494
INSDC AAY95312.2
NCBI Locus Tag PFL_6124
UniParc UPI00021A0115
UniProtKB Acc Q4K3K1
UniProtKB ID Q4K3K1_PSEF5
UniRef100 UniRef100_Q4K3K1
UniRef50 UniRef50_A4XNH4
UniRef90 UniRef90_A4XNH4

Product

Feature Type CDS
Coding Frame 1
Product Name
transglycosylase
Synonyms
Evidence for Translation
Charge (pH 7) 1.97
Kyte-Doolittle Hydrophobicity Value 1.189
Molecular Weight (kDa) 8.2
Isoelectric Point (pI) 9.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 100 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004977 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6124
Search term: transglycosylase

Human Homologs

References

No references are associated with this feature.