Pseudomonas protegens Pf-5, PFL_6127

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6127
Name
Replicon chromosome
Genomic location 6957393 - 6958307 (- strand)

Cross-References

RefSeq YP_263185.1
GI 70733410
Entrez 3480497
INSDC AAY95315.1
NCBI Locus Tag PFL_6127
UniParc UPI000054E2A5
UniProtKB Acc Q4K3J8
UniProtKB ID Q4K3J8_PSEF5
UniRef100 UniRef100_Q4K3J8
UniRef50 UniRef50_Q4K3J8
UniRef90 UniRef90_Q4K3J8

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 1.80
Kyte-Doolittle Hydrophobicity Value 0.156
Molecular Weight (kDa) 33.2
Isoelectric Point (pI) 7.62

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 481 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004981 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6127

Human Homologs

References

No references are associated with this feature.