Pseudomonas protegens Pf-5, PFL_6145 (aphA_3)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6145
Name
aphA_3
Replicon chromosome
Genomic location 6978942 - 6979973 (+ strand)

Cross-References

RefSeq YP_263203.1
GI 70733428
Entrez 3480515
INSDC AAY95333.1
NCBI Locus Tag PFL_6145
UniParc UPI000054E2B7
UniProtKB Acc Q4K3I0
UniProtKB ID Q4K3I0_PSEF5
UniRef100 UniRef100_Q4K3I0
UniRef50 UniRef50_Q48935
UniRef90 UniRef90_Q4K3I0

Product

Feature Type CDS
Coding Frame 1
Product Name
acetylpolyamine aminohydrolase
Synonyms
Evidence for Translation
Charge (pH 7) -16.10
Kyte-Doolittle Hydrophobicity Value -0.150
Molecular Weight (kDa) 37459.6
Isoelectric Point (pI) 5.02

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 438 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001330 (480 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6145
Search term: aphA_3

Human Homologs

Ensembl 110, assembly GRCh38.p14
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
E-value: 1.4e-21
Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
E-value: 1.4e-21
Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
E-value: 1.4e-21
Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
E-value: 1.4e-21
Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
E-value: 1.4e-21
Percent Identity: 29.7

References

No references are associated with this feature.