Pseudomonas protegens Pf-5, PFL_6220 (atpF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6220
Name
atpF
Replicon chromosome
Genomic location 7060795 - 7061265 (- strand)

Cross-References

RefSeq YP_263278.1
GI 70733503
EC Number 3.6.3.14
Entrez 3480590
INSDC AAY95408.1
NCBI Locus Tag PFL_6220
UniParc UPI000054E302
UniProtKB Acc Q4K3A5
UniProtKB ID ATPF_PSEF5
UniRef100 UniRef100_Q4K3A5
UniRef50 UniRef50_B0U5A2
UniRef90 UniRef90_Q87TT0

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP synthase F0F1 subunit B
Synonyms
Evidence for Translation
Charge (pH 7) -1.55
Kyte-Doolittle Hydrophobicity Value -0.142
Molecular Weight (kDa) 16.9
Isoelectric Point (pI) 5.83

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 387 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005089 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6220
Search term: atpF

Human Homologs

References

No references are associated with this feature.