Pseudomonas protegens Pf-5, PFL_6229 (trmE)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_6229
Name	trmE
Replicon	chromosome
Genomic location	7070484 - 7071854 (- strand)

Cross-References

RefSeq	YP_263287.1
GI	70733512
Entrez	3480599
INSDC	AAY95417.1
NCBI Locus Tag	PFL_6229
UniParc	UPI000054E30A
UniProtKB Acc	Q4K396
UniProtKB ID	MNME_PSEF5
UniRef100	UniRef100_Q4K396
UniRef50	UniRef50_Q9CLQ1
UniRef90	UniRef90_Q4K396

Product

Feature Type	CDS
Coding Frame	1
Product Name	tRNA modification GTPase TrmE
Synonyms
Evidence for Translation
Charge (pH 7)	-23.47
Kyte-Doolittle Hydrophobicity Value	0.001
Molecular Weight (kDa)	48844.7
Isoelectric Point (pI)	4.57

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 608 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005098 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_6229 Search term: trmE Search term: tRNA modification GTPase TrmE

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000313818 GTP binding protein 3, mitochondrial [Source:HGNC Symbol;Acc:HGNC:14880] E-value: 1.1e-58 Percent Identity: 37.4
Ensembl 110, assembly GRCh38.p14	ENSP00000354598 GTP binding protein 3, mitochondrial [Source:HGNC Symbol;Acc:HGNC:14880] E-value: 1.1e-58 Percent Identity: 37.4

References