Pseudomonas protegens CHA0, PFLCHA0_c00240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest |
| Locus Tag |
PFLCHA0_c00240
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 24999 - 26009 (+ strand) |
Cross-References
| RefSeq | YP_007997335.1 |
| GI | 501677509 |
| Entrez | 15557940 |
| NCBI Locus Tag | PFLCHA0_c00240 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
LysM domain protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 3.24 |
| Kyte-Doolittle Hydrophobicity Value | -0.207 |
| Molecular Weight (kDa) | 36778.8 |
| Isoelectric Point (pI) | 9.54 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 92 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000020 (467 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c00240
Search term: LysM domain protein
|
Human Homologs
References
No references are associated with this feature.