Pseudomonas protegens CHA0, PFLCHA0_c18980 (ydeF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest |
| Locus Tag |
PFLCHA0_c18980
|
| Name |
ydeF
|
| Replicon | chromosome |
| Genomic location | 2087776 - 2089200 (+ strand) |
Cross-References
| RefSeq | YP_007999184.1 |
| GI | 501679358 |
| Entrez | 15559814 |
| NCBI Locus Tag | PFLCHA0_c18980 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
HTH-type transcriptional regulator YdeF
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 2.93 |
| Kyte-Doolittle Hydrophobicity Value | -0.084 |
| Molecular Weight (kDa) | 51487.6 |
| Isoelectric Point (pI) | 7.62 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 612 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG005103 (201 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c18980
Search term: ydeF
Search term: HTH-type transcriptional regulator YdeF
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
aminoadipate aminotransferase [Source:HGNC Symbol;Acc:HGNC:17929]
E-value:
5.3e-19
Percent Identity:
25.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
aminoadipate aminotransferase [Source:HGNC Symbol;Acc:HGNC:17929]
E-value:
5.3e-19
Percent Identity:
25.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
aminoadipate aminotransferase [Source:HGNC Symbol;Acc:HGNC:17929]
E-value:
5.3e-19
Percent Identity:
25.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
aminoadipate aminotransferase [Source:HGNC Symbol;Acc:HGNC:17929]
E-value:
5.3e-19
Percent Identity:
25.8
|
References
No references are associated with this feature.