Pseudomonas protegens CHA0, PFLCHA0_c25960 (bkdA1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest |
| Locus Tag |
PFLCHA0_c25960
|
| Name |
bkdA1
|
| Replicon | chromosome |
| Genomic location | 2846286 - 2847344 (- strand) |
Cross-References
| RefSeq | YP_007999871.1 |
| GI | 501680045 |
| EC Number | 1.2.4.4 |
| Entrez | 15560512 |
| NCBI Locus Tag | PFLCHA0_c25960 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
2-oxoisovalerate dehydrogenase subunit beta
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -9.78 |
| Kyte-Doolittle Hydrophobicity Value | -0.103 |
| Molecular Weight (kDa) | 38.5 |
| Isoelectric Point (pI) | 5.19 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 2BP7 | OXIDOREDUCTASE | 04/18/05 | New crystal form of the Pseudomonas putida branched-chain dehydrogenase (E1) | PSEUDOMONAS PUTIDA | 2.9 | X-RAY DIFFRACTION | 91.2 |
| 1QS0 | OXIDOREDUCTASE | 06/24/99 | Crystal Structure of Pseudomonas Putida 2-oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1B) | Pseudomonas putida | 2.4 | X-RAY DIFFRACTION | 91.4 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 531 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG002214 (793 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c25960
Search term: bkdA1
Search term: 2-oxoisovalerate dehydrogenase subunit beta
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
branched chain keto acid dehydrogenase E1 subunit beta [Source:HGNC Symbol;Acc:HGNC:987]
E-value:
2.9e-78
Percent Identity:
46.2
|
|
Ensembl
110, assembly
GRCh38.p14
|
branched chain keto acid dehydrogenase E1 subunit beta [Source:HGNC Symbol;Acc:HGNC:987]
E-value:
2.9e-78
Percent Identity:
46.2
|
References
No references are associated with this feature.