Pseudomonas protegens CHA0, PFLCHA0_c39450 (cspD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest |
| Locus Tag |
PFLCHA0_c39450
|
| Name |
cspD
|
| Replicon | chromosome |
| Genomic location | 4428987 - 4429244 (+ strand) |
Cross-References
| RefSeq | YP_008001215.1 |
| GI | 501681389 |
| Entrez | 15561861 |
| NCBI Locus Tag | PFLCHA0_c39450 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
cold shock domain protein CspD
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -0.54 |
| Kyte-Doolittle Hydrophobicity Value | -0.182 |
| Molecular Weight (kDa) | 9.1 |
| Isoelectric Point (pI) | 6.52 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 498 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG002930 (535 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c39450
Search term: cspD
Search term: cold shock domain protein CspD
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value:
3.2e-07
Percent Identity:
31.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value:
3.2e-07
Percent Identity:
31.8
|
References
No references are associated with this feature.