Pseudomonas protegens CHA0, PFLCHA0_c45200 (rumA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest |
| Locus Tag |
PFLCHA0_c45200
|
| Name |
rumA
|
| Replicon | chromosome |
| Genomic location | 5107697 - 5109049 (- strand) |
Cross-References
| RefSeq | YP_008001779.1 |
| GI | 501681953 |
| EC Number | 2.1.1.190 |
| Entrez | 15562436 |
| NCBI Locus Tag | PFLCHA0_c45200 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
23S rRNA (uracil-5-)-methyltransferase RumA
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 1.69 |
| Kyte-Doolittle Hydrophobicity Value | -0.114 |
| Molecular Weight (kDa) | 49131.8 |
| Isoelectric Point (pI) | 7.34 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 552 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000899 (553 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c45200
Search term: rumA
Search term: 23S rRNA (uracil-5-)-methyltransferase RumA
|
Human Homologs
References
No references are associated with this feature.