Pseudomonas poae RE_1-1-14, H045_07650

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas poae RE*1-1-14
GCF_000336465.1|latest
Locus Tag
H045_07650
Name
Replicon chromosome
Genomic location 1684608 - 1687787 (- strand)

Cross-References

RefSeq YP_007397096.1
GI 447916528
Entrez 14503328
INSDC AGE25600.1
NCBI Locus Tag H045_07650
UniParc UPI0002A7A4F6
UniProtKB Acc M4K4P1
UniProtKB ID M4K4P1_9PSED
UniRef100 UniRef100_M4K4P1
UniRef50 UniRef50_Q880Q4
UniRef90 UniRef90_Q880Q4

Product

Feature Type CDS
Coding Frame 1
Product Name
multidrug efflux RND transporter, permease protein MexF
Synonyms
Evidence for Translation
Charge (pH 7) -7.91
Kyte-Doolittle Hydrophobicity Value 0.307
Molecular Weight (kDa) 115.0
Isoelectric Point (pI) 5.66

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 1339.3 66.6 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 489 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H045_07650

Human Homologs

References

No references are associated with this feature.