Pseudomonas poae RE_1-1-14, H045_11225

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas poae RE*1-1-14
GCF_000336465.1|latest
Locus Tag
H045_11225
Name
Replicon chromosome
Genomic location 2597569 - 2597874 (+ strand)

Cross-References

RefSeq YP_007397806.1
GI 447917238
Entrez 14504038
INSDC AGE26310.1
NCBI Locus Tag H045_11225
UniParc UPI0002AF48F9
UniProtKB Acc M4K6Q9
UniProtKB ID M4K6Q9_9PSED
UniRef100 UniRef100_M4K6Q9
UniRef50 UniRef50_B3PL56
UniRef90 UniRef90_M4K6Q9

Product

Feature Type CDS
Coding Frame 1
Product Name
putative cold-shock protein
Synonyms
Evidence for Translation
Charge (pH 7) 0.12
Kyte-Doolittle Hydrophobicity Value -0.445
Molecular Weight (kDa) 11094.5
Isoelectric Point (pI) 7.05

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 497 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002930 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H045_11225

Human Homologs

Ensembl 110, assembly GRCh38.p14
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 6.4e-07
Percent Identity: 36.8
Ensembl 110, assembly GRCh38.p14
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 6.4e-07
Percent Identity: 36.8
Ensembl 110, assembly GRCh38.p14
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 6.4e-07
Percent Identity: 36.8

References

No references are associated with this feature.