Strain |
Pseudomonas poae RE*1-1-14
GCF_000336465.1|latest |
Locus Tag |
H045_11990
|
Name |
rplT
|
Replicon | chromosome |
Genomic location | 2774008 - 2774364 (- strand) |
RefSeq | YP_007397959.1 |
GI | 447917391 |
Entrez | 14504191 |
INSDC | AGE26463.1 |
NCBI Locus Tag | H045_11990 |
UniParc | UPI0002A78EA6 |
UniProtKB Acc | M4K028 |
UniProtKB ID | M4K028_9PSED |
UniRef100 | UniRef100_M4K028 |
UniRef50 | UniRef50_A0QHC1 |
UniRef90 | UniRef90_C1DF45 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
50S ribosomal protein L20
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 26.22 |
Kyte-Doolittle Hydrophobicity Value | -0.290 |
Molecular Weight (kDa) | 13.4 |
Isoelectric Point (pI) | 12.13 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 91.5 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 91.5 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 91.5 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 91.5 |
6SPB | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6 | Pseudomonas aeruginosa | 2.82 | ELECTRON MICROSCOPY | 91.5 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 91.5 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 91.5 |
6SPD | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 91.5 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG002830 (529 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: H045_11990
Search term: rplT
Search term: 50S ribosomal protein L20
|
Ensembl
110, assembly
GRCh38.p14
|
mitochondrial ribosomal protein L20 [Source:HGNC Symbol;Acc:HGNC:14478]
E-value:
2.5e-10
Percent Identity:
37.6
|