Pseudomonas poae RE_1-1-14, H045_16810 (truB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas poae RE*1-1-14
GCF_000336465.1|latest
Locus Tag
H045_16810
Name
truB
Replicon chromosome
Genomic location 3848824 - 3849741 (- strand)

Cross-References

RefSeq YP_007398921.1
GI 447918353
Entrez 14505153
INSDC AGE27425.1
NCBI Locus Tag H045_16810
UniParc UPI0002A7A443
UniProtKB Acc M4K9Q6
UniProtKB ID M4K9Q6_9PSED
UniRef100 UniRef100_M4K9Q6
UniRef50 UniRef50_Q4KIF4
UniRef90 UniRef90_Q4KIF4

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA pseudouridine synthase B
Synonyms
Evidence for Translation
Charge (pH 7) -3.91
Kyte-Doolittle Hydrophobicity Value -0.196
Molecular Weight (kDa) 33.3
Isoelectric Point (pI) 5.74

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 658 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004387 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H045_16810
Search term: truB

Human Homologs

Ensembl 110, assembly GRCh38.p14
TruB pseudouridine synthase family member 1 [Source:HGNC Symbol;Acc:HGNC:16060]
E-value: 1.9e-33
Percent Identity: 39.2

References

No references are associated with this feature.