Pseudomonas poae RE_1-1-14, H045_17340

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas poae RE*1-1-14
GCF_000336465.1|latest
Locus Tag
H045_17340
Name
Replicon chromosome
Genomic location 3976125 - 3978635 (- strand)

Cross-References

RefSeq YP_007399026.1
GI 447918458
Entrez 14505258
INSDC AGE27530.1
NCBI Locus Tag H045_17340
UniParc UPI0002AF4770
UniProtKB Acc M4KA04
UniProtKB ID M4KA04_9PSED
UniRef100 UniRef100_M4KA04
UniRef50 UniRef50_B6IT84
UniRef90 UniRef90_C3K2J1

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent RNA helicase
Synonyms
Evidence for Translation
Charge (pH 7) 4.54
Kyte-Doolittle Hydrophobicity Value -0.233
Molecular Weight (kDa) 92355.8
Isoelectric Point (pI) 7.85

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown (This protein may have multiple localization sites) Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 314 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001718 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H045_17340

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.1e-59
Percent Identity: 34.5
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.1e-59
Percent Identity: 34.5
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.1e-59
Percent Identity: 34.5
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.1e-59
Percent Identity: 34.5
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.1e-59
Percent Identity: 34.5
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.1e-59
Percent Identity: 34.5

References

No references are associated with this feature.