Pseudomonas aeruginosa PAO1, PA2193 (hcnA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| LasR + RhlR binding site (lux box beta) | 2412308 | 2412327 | + |
|
Details | |
| LasR + RhlR binding site (lux box alpha) | 2412430 | 2412455 | + |
|
Details | |
| -10 region | 2412478 | 2412483 | + |
|
Details | |
| transcriptional initiation site (+1) | 2412487 | 2412487 | + |
|
Details | |
| Anr binding site | 2412467 | 2412480 | + |
|
Details | |
| -10 region | 2412503 | 2412508 | + |
|
Details | |
| transcriptional initiation site (+1) | 2412516 | 2412516 | + |
|
Details | |
| hcn promoter P1 | 2412443 | 2412492 | + |
|
Details | |
| hcn promoter P2 | 2412472 | 2412521 | + |
|
Details | |
| potential Anr site upstream of hcn operon | 2412459 | 2412513 | + |
|
Details | |
| LasR/RhlR box A upstream of hcn operon | 2412430 | 2412490 | + |
|
Details | |
| LasR/RhlR box B upstream of hcn operon | 2412285 | 2412346 | + |
|
Details | |
| hcnA promoter T3 | 2412250 | 2412499 | + |
|
Details | |
| transcription initiation site | 2412487 | 2412487 | + |
|
11092854 | Details |
| lux box beta | 2412308 | 2412327 | + |
|
11092854 | Details |
| lux box alpha | 2412435 | 2412454 | + |
|
11092854 | Details |
| transcription initiation site | 2412516 | 2412516 | + |
|
11092854 | Details |
| ANR box | 2412467 | 2412480 | + |
|
11092854 | Details |
| transcription initiation site, T1 transcript | 2412487 | 2412487 | + |
|
15317771 | Details |
| AlgR binding site, ARBS-1 | 2412131 | 2412149 | + |
|
15317771 | Details |
| transcription initiation site, T2 transcript | 2412516 | 2412516 | + |
|
15317771 | Details |
| AlgR binding site, ARBS-1 | 2412149 | 2412131 | + |
|
15317771 | Details |
| transcription initiation site, T3 | 2412295 | 2412295 | + |
|
19270096 | Details |
| AlgR binding site | 2412136 | 2412144 | - |
ECO:0000314
direct assay evidence used in manual assertion |
15466037 | Details |
| RsaL binding site | 2412460 | 2412474 | + |
ECO:0000314
direct assay evidence used in manual assertion |
18045385 | Details |
| Shine-Dalgarno sequence | 2412540 | 2412542 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |