Pseudomonas aeruginosa PAO1, PA2193 (hcnA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Operons
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Operon name:
hcnA
(1
gene members)
Experiment
Attributes
method:
Microarray analysis
Evidence
Transcription unit experimentally validated in a strain of the same species. The start coordinate will often be based on an experimentally validated transcription start site. For protein-coding genes, unless otherwise specified, the stop will be based on the stop codon.
References
Identification of AlgR-regulated genes in Pseudomonas aeruginosa by use of microarray analysis.
Lizewski SE, Schurr JR, Jackson DW, Frisk A, Carterson AJ, Schurr MJ
J. Bacteriol. 2004 Sep;186(17):5672-84
PubMed ID: 15317771
Cross-References
PseudoCAP:
41754
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Operon name:
hcnA
(1
gene members)
Experiment
Attributes
method:
Microarray analysis
Evidence
Transcription unit experimentally validated in a strain of the same species. The start coordinate will often be based on an experimentally validated transcription start site. For protein-coding genes, unless otherwise specified, the stop will be based on the stop codon.
References
Identification of AlgR-regulated genes in Pseudomonas aeruginosa by use of microarray analysis.
Lizewski SE, Schurr JR, Jackson DW, Frisk A, Carterson AJ, Schurr MJ
J. Bacteriol. 2004 Sep;186(17):5672-84
PubMed ID: 15317771
Cross-References
PseudoCAP:
41753
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Operon name:
hcnABC (T1 transcript)
(3
gene members)
Evidence
A transcription unit is inferred from author statement. In this case, there is often a set of adjacent genes, encoded in the same direction, coding for products that participate in the same metabolic pathway or biological process.
References
Transcriptional control of the hydrogen cyanide biosynthetic genes hcnABC by the anaerobic regulator ANR and the quorum-sensing regulators LasR and RhlR in Pseudomonas aeruginosa.
Pessi G, Haas D
J. Bacteriol. 2000 Dec;182(24):6940-9
PubMed ID: 11092854
Cross-References
PseudoCAP:
41751
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Operon name:
hcnA
(1
gene members)
Evidence
A transcription unit is inferred from author statement. In this case, there is often a set of adjacent genes, encoded in the same direction, coding for products that participate in the same metabolic pathway or biological process.
References
Pseudomonas aeruginosa AlgR controls cyanide production in an AlgZ-dependent manner.
Cody WL, Pritchett CL, Jones AK, Carterson AJ, Jackson D, Frisk A, Wolfgang MC, Schurr MJ
J. Bacteriol. 2009 May;191(9):2993-3002
PubMed ID: 19270096
Cross-References
PseudoCAP:
41755
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Operon name:
hcnA-hcnB-hcnC
(3
gene members)
Evidence
Computationally-predicted.
References
DOOR: a database for prokaryotic operons.
Mao F, Dam P, Chou J, Olman V, Xu Y
Nucleic Acids Res. 2009 Jan;37(Database issue):D459-63
PubMed ID: 18988623
Cross-References
DOOR:
13566
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Operon name:
hcnABC (T2 transcript)
(3
gene members)
Evidence
A transcription unit is inferred from author statement. In this case, there is often a set of adjacent genes, encoded in the same direction, coding for products that participate in the same metabolic pathway or biological process.
References
Transcriptional control of the hydrogen cyanide biosynthetic genes hcnABC by the anaerobic regulator ANR and the quorum-sensing regulators LasR and RhlR in Pseudomonas aeruginosa.
Pessi G, Haas D
J. Bacteriol. 2000 Dec;182(24):6940-9
PubMed ID: 11092854
Cross-References
PseudoCAP:
41752
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