Pseudomonas aeruginosa PAO1, PA2194 (hcnB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| LasR + RhlR binding site (lux box alpha) | 2412430 | 2412455 | + |
|
Details | |
| -10 region | 2412478 | 2412483 | + |
|
Details | |
| transcriptional initiation site (+1) | 2412487 | 2412487 | + |
|
Details | |
| Anr binding site | 2412467 | 2412480 | + |
|
Details | |
| -10 region | 2412503 | 2412508 | + |
|
Details | |
| transcriptional initiation site (+1) | 2412516 | 2412516 | + |
|
Details | |
| hcn promoter P1 | 2412443 | 2412492 | + |
|
Details | |
| hcn promoter P2 | 2412472 | 2412521 | + |
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Details | |
| potential Anr site upstream of hcn operon | 2412459 | 2412513 | + |
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Details | |
| LasR/RhlR box A upstream of hcn operon | 2412430 | 2412490 | + |
|
Details | |
| hcnA promoter T3 | 2412250 | 2412499 | + |
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Details | |
| transcription initiation site | 2412487 | 2412487 | + |
|
11092854 | Details |
| lux box alpha | 2412435 | 2412454 | + |
|
11092854 | Details |
| transcription initiation site | 2412516 | 2412516 | + |
|
11092854 | Details |
| ANR box | 2412467 | 2412480 | + |
|
11092854 | Details |
| transcription initiation site, T1 transcript | 2412487 | 2412487 | + |
|
15317771 | Details |
| AlgR binding site, ARBS-2 | 2412662 | 2412680 | + |
|
15317771 | Details |
| transcription initiation site, T2 transcript | 2412516 | 2412516 | + |
|
15317771 | Details |
| RsaL binding site | 2412460 | 2412474 | + |
ECO:0000314
direct assay evidence used in manual assertion |
18045385 | Details |
| Shine-Dalgarno sequence | 2412540 | 2412542 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CATGCGGCCG-N37-CGGCCGCATG | 2413361 | 2413417 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: TCGGCGGGCGC-N39-GCGCCCGCCGA | 2413815 | 2413875 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |