Pseudomonas aeruginosa PAO1, PA4935 (rpsF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006412 translation
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 2459389 Reviewed by curator
Molecular Function GO:0003723 RNA binding
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 2459389 Reviewed by curator
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01250
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019843 rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01250
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01250
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01250
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR21011 MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 IPR000529 Small ribosomal subunit protein bS6 1 105 4.1E-22
Hamap MF_00360 30S ribosomal protein S6 [rpsF]. IPR020814 Small ribosomal subunit protein bS6, plastid/chloroplast 1 94 21.600733
MobiDBLite mobidb-lite consensus disorder prediction - - 95 139 -
FunFam G3DSA:3.30.70.60:FF:000003 30S ribosomal protein S6 - - 1 117 4.8E-62
Gene3D G3DSA:3.30.70.60 - IPR014717 Translation elongation factor EF1B/small ribosomal subunit protein bS6 1 118 7.3E-33
Pfam PF01250 Ribosomal protein S6 IPR000529 Small ribosomal subunit protein bS6 3 91 1.1E-26
SUPERFAMILY SSF54995 Ribosomal protein S6 IPR035980 Small ribosomal subunit protein bS6 superfamily 1 102 9.55E-37
CDD cd00473 bS6 IPR020814 Small ribosomal subunit protein bS6, plastid/chloroplast 3 92 4.16682E-35
NCBIfam TIGR00166 JCVI: 30S ribosomal protein S6 IPR000529 Small ribosomal subunit protein bS6 1 93 2.7E-33
MobiDBLite mobidb-lite consensus disorder prediction - - 95 125 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.