Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4935
|
Name |
rpsF
|
Replicon | chromosome |
Genomic location | 5537319 - 5537738 (- strand) |
RefSeq | NP_253622.1 |
GI | 15600128 |
Affymetrix | PA4935_rpsF_at |
DNASU | PaCD00008138 |
Entrez | 877646 |
GenBank | AAG08320.1 |
INSDC | AAG08320.1 |
NCBI Locus Tag | PA4935 |
protein_id(GenBank) | gb|AAG08320.1|AE004906_8|gnl|PseudoCAP|PA4935 |
TIGR | NTL03PA04936 |
UniParc | UPI00001350C1 |
UniProtKB Acc | Q9HUM9 |
UniProtKB ID | RS6_PSEAE |
UniRef100 | UniRef100_A6VD48 |
UniRef50 | UniRef50_P02358 |
UniRef90 | UniRef90_A6VD48 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
30S ribosomal protein S6
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Detected by MALDI-TOF/TOF (PMID:19333994).
|
Charge (pH 7) | -10.82 |
Kyte-Doolittle Hydrophobicity Value | -1.088 |
Molecular Weight (kDa) | 16.2 |
Isoelectric Point (pI) | 4.58 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
6SPE | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.6 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 100.0 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 99.0 |
6SPC | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.95 | ELECTRON MICROSCOPY | 99.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 555 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004550 (536 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4935
Search term: rpsF
Search term: 30S ribosomal protein S6
|
A new ribosomal protein locus in Escherichia coli: the gene for protein S6 maps at 97 min.
Isono K, Kitakawa M
Mol Gen Genet 1977 Jun 8;153(2):115-20
PubMed ID: 329109
|
Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12.
Kang WK, Icho T, Isono S, Kitakawa M, Isono K
Mol Gen Genet 1989 Jun;217(2-3):281-8
PubMed ID: 2570347
|
Phosphorylation of elongation factor G and ribosomal protein S6 in bacteriophage T7-infected Escherichia coli.
Robertson ES, Aggison LA, Nicholson AW
Mol Microbiol 1994 Mar;11(6):1045-57
PubMed ID: 8022276
|
Analysis of the periplasmic proteome of Pseudomonas aeruginosa, a metabolically versatile opportunistic pathogen.
Imperi F, Ciccosanti F, Perdomo AB, Tiburzi F, Mancone C, Alonzi T, Ascenzi P, Piacentini M, Visca P, Fimia GM
Proteomics 2009 Apr;9(7):1901-15
PubMed ID: 19333994
|